A gentle introduction to water and its
structure
WATER Mechanics
Source

A gentle introduction to water and its structure
Water has long been known to exhibit
many physical properties that distinguish it from other small molecules of
comparable mass. Chemists refer to these as the "anomalous" properties of
water, but they are by no means mysterious; all are entirely predictable
consequences of the way the size and nuclear charge of the oxygen atom
conspire to distort the electronic charge clouds of the atoms of other
elements when these are chemically bonded to the oxygen.
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A covalent chemical bond consists of two atoms that
share a pair of electrons between them. In the water molecule H2O,
the single electron of each H is shared with one of the six
outer-shell electrons of the oxygen, leaving four electrons which are
organized into two non-bonding pairs. Thus the oxygen atom is
surrounded by four electron pairs that would ordinarily tend to
arrange themselves as far from each other as possible in order to
minimize repulsions between these clouds of negative charge. This
would ordinarly result in a tetrahedral geometry in which the angle
between electron pairs (and therefore the H-O-H bond angle) is 109°.
However, because the two non-bonding pairs remain closer to the oxygen
atom, these exert a stronger repulsion against the two covalent
bonding pairs, effectively pushing the two hydrogen atoms closer
together. The result is a distorted tetrahedral arrangement in which
the H—O—H angle is 104.5°. |
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Computer-generated image of a water molecule
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These two computer-generated images of the H2O
molecule come from calculations that model the electron distribution
in molecules. The outer envelopes show the effective "surface" of the
molecule. |
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The H2O molecule is
electrically neutral, but the positive and negative charges are not
distributed uniformly. This is shown clearly in the two images above,
and in the schematic diagram at the left. The electronic (negative)
charge is concentrated at the oxygen end of the molecule, owing partly
to the nonbonding electrons (solid blue circles), and to oxygen's high
nuclear charge. This charge displacement constitutes an electric
dipole, represented by the arrow at the bottom; you can think of
this dipole as the electrical "image" of a water molecule. |
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As
we all learned in school, opposite charges attract, so the
partially-positive hydrogen atom on one water molecule is
electrostatically attracted to the partially-negative oxygen on a
neighboring molecule. This process is called (somewhat misleadingly)
hydrogen bonding. Notice that the hydrogen bond (shown by the dashed
blue line) is somewhat longer (117 pm) than the covalent O—H bond
(99 pm).
This means that it is considerably weaker; it is so weak, in fact,
that a given hydrogen bond cannot survive for more than a tiny
fraction of a second. |
Liquid and solid water
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Ice
we know all about: each water molecule is surrounded by four
neighboring H2Os. two of these are hydrogen-bonded to the
oxygen atom on the central H2O molecule, and each of the
two hydrogen atoms is similarly bonded to another neighboring H2O.
The hydrogen bonds are represented by the
dashed lines in this 2-dimensional schematic diagram. In reality,
the four bonds from each O atom point toward the four corners of a
tetrahedron centered on the O atom. This basic assembly repeats
itself in three dimensions to build the ice crystal. |
When
ice melts to form liquid water, the uniform three-dimensional
tetrahedral organization of the solid breaks down as thermal motions
disrupt, distort, and occasionally break hydrogen bonds. The methods
used to determine the positions of molecules in a solid do not work
with liquids, so there is no unambiguous way of determining the
detailed structure of water. The illustration here is probably
typical of the arrangement of neighbors around any particular H2O
molecule, but very little is known about the extent to which an
arrangement like this gets propagated to more distant molecules. |
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Here are three-dimensional views of a typical
local structure of liquid water (right) and of ice (left). Notice
how the greater openness of the ice structure which is necessary to
ensure the strongest degree of hydrogen bonding in a uniform,
extended crystal lattice. |
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The anomalous properties of water
The
other widely-cited anomalous property of water is its high boiling
point. As this graph shows, a molecule as light as H2O
"should" boil at around –90°C; that is, it should exist in the world
as a gas rather than a liquid, if H-bonding were not present. Notice
that H-bonding is also observed with fluorine and nitrogen. |
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Water clusters, structured water and biowater
Since the 1930s, chemists have described
water as an "associated" liquid, meaning that hydrogen-bonding attractions
between H2O create loosely-linked aggregates. Because the
strength of a hydrogen bond is comparable to the average thermal energy at
ordinary temperatures, these bonds are disrupted by thermal motions almost
as quickly as they form. Theoretical studies have shown that certain
specific cyclic arrangements ("clusters") of 3, 4, and 5 H2O
molecules are especially stable, as is a three-dimensional hexamer (6
molecules) that has a cage-like form. But even the most stable of these
clusters will flicker out of existence after only about 10 picoseconds.
It must be emphasized that no clustered unit or
arrangement has ever been isolated or identified in pure bulk liquid
water.
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Liquid water can be thought of as a seething mass of
water molecules in which hydrogen-bonded clusters are continually
forming, breaking apart, and re-forming. Theoretical models suggest
that the average cluster may encompass as many as 90 H2O
molecules at 0°C, so that very cold water can be thought of as a
collection of ever-changing ice-like structures. At 70° C, the average
cluster size is probably no greater than about 25. |
So-called "structured water"
Water molecules interact strongly with
non-hydrogen bonding species as well. A particularly strong interaction
occurs when an ionic substance such as sodium chloride (ordinary salt)
dissolves in water. Owing to its high polarity, the H2O
molecules closest to the dissolved ion are strongly attached to it,
forming what is known as the primary hydration shell. Positively-charged
ions such as Na+ attract the negative (oxygen) ends of the H2O
molecules, as shown in the diagram below. The ordered structure within the
primary shell creates, through hydrogen-bonding, a region in which the
surrounding waters are also somewhat ordered; this is the outer hydration
shell, or cybotactic region.
Biowater
Water can hydrogen-bond not only to
itself, but also to any other molecules that have -OH or -NH2
units hanging off of them. This includes simple molecules such as
alcohols, surfaces such as glass, and macromolecules such as proteins. The
biological activity of proteins (of which enzymes are an important subset)
is critically dependent not only on their composition but also on the way
these huge molecules are folded; this folding involves hydrogen-bonded
interactions with water, and also between different parts of the molecule
itself. Anything that disrupts these intramolecular hydrogen bonds will
denature the protein and destroy its biological activity. This is
essentially what happens when you boil an egg; the bonds that hold the egg
white protein in its compact folded arrangement break apart so that the
molecules unfold into a tangled, insoluble mass which, like Humpty Dumpty,
cannot be cannot be restored to their original forms. Note that
hydrogen-bonding need not always involve water; thus the two parts of the
DNA double helix are held together by H—N—H hydrogen bonds.
It is now known that the intracellular
water very close to any membrane or organelle (sometimes called vicinal
water) is organized very differently from bulk water, and that this
structured water plays a significant role in governing the shape (and thus
biological activity) of large folded biopolymers. It is important to bear
in mind, however, that the structure of the water in these regions is
imposed solely by the geometry of the surrounding hydrogen bonding sites.
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This
picture, taken from the work of William Royer Jr. of the U. Mass.
Medical School, shows the water structure (small green circles) that
exists in the space between the two halves of a kind of dimeric
hemoglobin. The thin dotted lines represent hydrogen bonds. Owing to
the geometry of the hydrogen-bonding sites on the heme protein
backbones, the H2O molecules within this region are highly
ordered; the local water structure is stabilized by these hydrogen
bonds, and the resulting water cluster in turn stabilizes this
particular geometric form of the hemoglobin dimer. More diagrams, with
commentary, can be found on
Prof. Royer's Web site. |
"Clustered", "Unclustered" and other structure-altered waters
The "alternative"
health market is full of goofy
products which purport to alter the structure of
water by stabilizing groups of H2O molecules into permanent
clusters of 4-8 molecules, or alternatively, to break up what they claim
are the larger clusters (usually 10-15 molecules) that they say normally
exist in water. The object in either case is to promote the flow of water
into the body's cells ("cellular hydration"). This is of course utter
nonsense; there is no credible scientific evidence for any of these
claims, many of which verge on the bizarre. There are even some
scientifically absurd U.S. Patents for the
manufacture of a "clustered" form of water. At least 20 manufacturers
offer nostrums of this kind to the scientifically-naive public through
hundreds of Web sites and late-night radio "infomercials". None of these
claims is supported by credible evidence.
How chemists think about water
The nature of liquid water and how the H2O
molecules within it are organized and interact are questions that have
attracted the interest of chemists for many years. There is probably no
liquid that has received more intensive study, and there is now a huge
literature on this subject.The following
facts are well established:
- H2O molecules attract
each other through the special type of dipole-dipole interaction known
as hydrogen bonding
- a hydrogen-bonded cluster in which
four H2Os are located at the corners of an imaginary
tetrahedron is an especially favorable (low-potential energy)
configuration, but...
- the molecules undergo rapid thermal
motions on a time scale of picoseconds (10–12 second), so
the lifetime of any specific clustered configuration will be
fleetingly brief.
A variety of techniques including infrared
absorption, neutron scattering, and nuclear magnetic resonance have been
used to probe the microscopic structure of water. The information
garnered from these experiments and from theoretical calculations has
led to the development of around twenty "models" that attempt to explain
the structure and behavior of water. More recently, computer simulations
of various kinds have been employed to explore how well these models are
able to predict the observed physical properties of water.
This work has led to a gradual refinement of our
views about the structure of liquid water, but it has not produced any
definitive answer. There are several reasons for this, but the principal
one is that the very concept of "structure" (and of water "clusters")
depends on both the time frame and volume under consideration. Thus
questions of the following kinds are still open:
- How do you distinguish the members
of a "cluster" from adjacent molecules that are not in that cluster?
- Since individual hydrogen bonds are
continually breaking and re-forming on a picosecond time scale, do
water clusters have any meaningful existence over longer periods of
time? In other words, clusters are transient, whereas "structure"
implies a molecular arrangement that is more enduring. Can we then
legitimately use the term "clusters" in describing the structure of
water?
- The possible locations of
neighboring molecules around a given H2O are limited by
energetic and geometric considerations, thus giving rise to a certain
amount of "structure" within any small volume element. It is not
clear, however, to what extent these structures interact as the size
of the volume element is enlarged. And as mentioned above, to what
extent are these structures maintained for periods longer than a few
picoseconds?
The view first developed in the 1950's that water
is a collection of "flickering clusters" of varying sizes has gradually
been abandoned as being unable to account for many of the observed
properties of the liquid. The current thinking, influenced greatly by
molecular modeling simulations beginning in the 1980s, is that on a very
short time scale (less than a picosecond), water is more like a "gel"
consisting of a single, huge hydrogen-bonded cluster. On a 10-12-10-9
sec time scale, rotations and other thermal motions cause individual
hydrogen bonds to break and re-form in new configurations, inducing
ever-changing local discontinuities whose extent and influence depends
on the temperature and pressure. It is quite likely that over very small
volumes, localized (H2O)n polymeric
clusters may have a fleeting existence, and many theoretical
calculations have been made showing that some combinations are more
stable than others. While this might prolong their lifetimes, it does
not appear that they remain intact long enough to detect as directly
observable entities in ordinary bulk water at normal pressures.
Nevertheless, water clusters are of considerable
interest as models for the study of water and water surfaces, and many
articles on them are published every year.
Does water have "memory"?
According to modern-day proponents of
homeopathy, it must. Homeopathic remedys are made by diluting solutions of
various substances so greatly that not even a single molecule of the
active substance can be expected to be present in the final medication.
Now that even the homeopaths have come to accept this fact, they explain
that the water somehow retains the "imprint" or "memory" of the original
solute.
In 1985, Jacques Benveniste, a French
biologist, conducted experiments that purported to show that a certain
type of cellular immune response could be brought about by an
anti-immunoglobulin agent that had been diluted to such an extent that it
is highly unlikely that even one molecule of this agent remained in the
aqueous solution. He interpreted this to indicate that water could somehow
retain an impression, or "memory", of a solute that had been diluted out
of existence. This result was immediately taken by believers in homeopathy
as justification for their belief that similarly diluted remedies could be
effective as alternative medical agents. The consensus among chemists is
that any temporary disruption of the water structure by a dissolved agent
would disappear within a fraction of a nanosecond after its removal by
dilution, owing to the vigorous thermal motions of the water molecules.
Benveniste's results have never been replicated by other scientists, and
they seemed so bizarre that his scientific reputation and research career
were largely destroyed. In early 2001, however, an independent group of
researchers, in a very carefully designed double-blind study, did report
statistically significant evidence of a similar kind of "water memory"
effect. A journalistic account of this work
can be seen here. Only time will tell whether there is anything to
this, but if there should be, then we chemists, who think we know so much
about water, will once again be humbled.

References
The mystery, art and science of water.
This site provides a wonderful view of water in all the many ways it
impacts upon the multiple facets of our culture. Highly recommended.
Water Structure and Propertiesis a Web site developed by Martin Chaplin
at South Bank University in England. It is a scientifically sound, well
laid-out collection of articles on water and its structure which should
answer any of your questions.
Water Clusters.
K. Liu, J.D. Cruzan, and R.J. Saykally. Science 1996 929-993 - A
summary of experimental data on the structures, energetics and dynamics of
small clusters, and comparisons with theoretical predictions.
"Water Buckyballs": Chemical, catalytic and cosmic implications.
This rather technical paper by Keith Johnson of MIT explores the quantum
theory and far-i.r. spectra of water clusters and speculates on their role
in cosmochemistry.
Cell-associated water.
W. Drost-Hansen, J. Clegg, ed. Academic Press, 1979. This is a collection
of 11 papers given at a conference in 1976. It predates the availability
of modern laser-based methods of examining water structure, but contains a
lot of indirect observations and NMR results.
Why is water blue? It's
all about O-H bond stretching!
A more technical
site.
And finally, for a darker view of water,
see the Ban
DHMO page.
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